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Publications · Dongkuan
Xu, Wei Cheng, Bo Zong, Dongjin Song, Jingchao Ni, Wenchao Yu, Yanchi Liu,
Haifeng Chen, Xiang Zhang. "Tensorized LSTM with
Adaptive Shared Memory for Learning Trends in Multivariate Time Series",
Proceedings of the AAAI International Conference on Artificial Intelligence
(AAAI), 2020. [pdf] · Dongsheng
Luo, Jingchao Ni, Suhang Wang, Yuchen Bian, Xiong Yu, and Xiang Zhang. "Deep Multi-Graph Clustering via Attentive
Cross-Graph Association", Proceedings of the
International Conference on Web Search and Data Mining (WSDM), 2020. [pdf] · Jiang
Bian, Weibo Wang, Xiang Zhang, Wei Wang, Arthur Huang, and Zhishan Guo.
"On Generating Dominators of Customer
Preferences", Proceedings of the IEEE International
Conference on Big Data (Big Data), 2019. [pdf] · Dongkuan
Xu, Wei Cheng, Dongsheng Luo, Yameng Gu, Xiao Liu, Jingchao Ni, Bo Zong,
Haifeng Chen, and Xiang Zhang. "Adaptive Neural Network for Node
Classification in Dynamic Networks", Proceedings of the IEEE
International Conference on Data Mining (ICDM), 2019. [pdf] · Yuchen
Bian, Dongsheng Luo, Yaowei Yan, Wei Cheng, and Xiang Zhang.
"Memory-Based Random Walk for Multi-Query Local Community
Detection", Knowledge and Information
Systems (KAIS), 2019. [pdf] · Wei
Cheng, Xiang Zhang, and Wei Wang. "Sparse Regression Models for
Unraveling Group and Individual Associations in eQTL Mapping", Methods in Molecular Biology,
Springer (New York), 2019. [pdf] · Dongkuan
Xu, Wei Cheng, Dongsheng Luo, Xiao Liu, Xiang Zhang. "Spatio-Temporal
Attentive RNN for Node Classification in Temporal Attributed Graphs", Proceedings of the International Joint Conference
on Artificial Intelligence (IJCAI), 2019. [pdf]
· Yaowei
Yan, Yuchen Bian, Dongsheng Luo, Dongwon Lee and Xiang Zhang.
"Constrained Local Graph Clustering by Colored Random Walk", Proceedings of the International Conference on
World Wide Web (WWW), 2019. [pdf] · Dongkuan
Xu, Wei Cheng, Bo Zong, Jingchao Ni, Dongjin Song, Wenchao Yu, Haifeng Chen,
and Xiang Zhang. "Deep Co-Clustering", Proceedings of the SIAM
International Conference on Data Mining (SDM), 2019. [pdf]
· Yuchen
Bian, Yaowei Yan, Wei Cheng, Wei Wang, Dongsheng Luo, and Xiang Zhang.
"On Multi-Query Local Community Detection", Proceedings of the IEEE
International Conference on Data Mining (ICDM), 2018. [pdf] (Best Paper Candidate) · Yuan
Yao, Hanghang Tong, Guo Yan, Feng Xu, Xiang Zhang, Boleslaw Szymanski, Jian
Lu. "Dual-Regularized One-Class Collaborative Filtering with Implicit
Feedback", World Wide Web Journal
(WWWJ), 2018. [pdf] · Yuchen
Bian, Jingchao Ni, Wei Cheng, and Xiang Zhang. "The Multi-Walker Chain
and Its Application in Local Community Detection", Knowledge and Information Systems (KAIS),
2018. [pdf] · Yaowei
Yan, Dongsheng Luo, Jingchao Ni, Hongliang Fei, Wei Fan, Xiong Yu, John Yen,
and Xiang Zhang. "Local Graph Clustering by Multi-Network Random Walk
with Restart", Proceedings of the
Pacific-Asia Conference on Knowledge Discovery and Data Mining
(PAKDD), 2018. [pdf] · Jingchao
Ni, Shiyu Chang, Xiao Liu, Wei Cheng, Haifeng Chen, Dongkuan Xu and Xiang
Zhang. "Co-Regularized Deep Multi-Network Embedding", Proceedings of the International Conference on
World Wide Web (WWW), 2018. [pdf] · Yubao
Wu, Xiang Zhang, Yuchen Bian, Zhipeng Cai, Xiang Lian, Fengpan Zhao, Xueting
Liao, Syed Hussain. "Second-Order Random Walk Based Proximity Measures
in Graph Analysis: Formulations and Algorithms", The VLDB Journal
(VLDBJ), 2017. [pdf] · Jingchao
Ni, Wei Cheng, Wei Fan, and Xiang Zhang. "ComClus: A Self-Grouping
Framework for Multi-Network Clustering", IEEE Transactions on Knowledge
and Data Engineering (TKDE), 2017. [pdf] · Xiaoyin
Li, Susan Redline, Xiang Zhang, Scott Williams, and Xiaofeng Zhu.
"Height Associated Variants Demonstrate Assortative Mating in Human
Populations", Nature Scientific Reports, 2017. [pdf] · Yuchen
Bian, Jingchao Ni, Wei Cheng, and Xiang Zhang. "Many Heads are Better
than One: Local Community Detection by the Multi-Walker Chain",
Proceedings of the IEEE International Conference on Data Mining (ICDM), 2017.
[pdf]
(Best
Paper Candidate) · Jingchao Ni, Wei Cheng, Kai Zhang, Dongjin Song,
Tan Yan, Haifeng Chen, and Xiang Zhang. "Ranking Causal Anomalies by
Modeling Local Propagations on Networked Systems", Proceedings of the
IEEE International Conference on Data Mining (ICDM), 2017. [pdf] · Jingchao
Ni, Hongliang Fei, Wei Fan, and Xiang Zhang. "Automated Medical
Diagnosis by Ranking Clusters Across the Symptom-Disease Network",
Proceedings of the IEEE International Conference on Data Mining (ICDM), 2017.
[pdf] · Xiaojin Li, Licong Cui, Shiqiang Tao, Jing Chen, Xiang Zhang, and Guoqiang Zhang. "HyCLASSS: A Hybrid Classifier for Automatic Sleep Stage Scoring", IEEE Journal of Biomedical and Health Informatics (JBHI), 2017. [pdf] · Jingchao Ni, Hongliang Fei, Wei Fan, and Xiang Zhang. "Cross-Network Clustering and Cluster Ranking for Medical Diagnosis", Proceedings of the IEEE International Conference on Data Engineering (ICDE), 2017. [pdf] · Wei Cheng, Jingchao Ni, Kai Zhang, Haifeng Chen, Guofei Jiang, Yu shi, Xiang Zhang, and Wei Wang. "Ranking Causal Anomalies for System Fault Diagnosis via Temporal and Dynamical Analysis on Vanishing Correlations", ACM Transactions on Knowledge Discovery from Data (TKDD), 2017. [pdf] · Yubao Wu, Yuchen Bian, and Xiang Zhang. "Remember Where You Came from: On the Second-Order Random Walk Based Proximity Measures", Proceedings of the VLDB Endowment (PVLDB), 10 (1), 13-24, 2016. [pdf] · Heming Wang, Yoonha Choi, Bamidele Tayo, Xuefeng Wang, Xiang Zhang, Uli Broeckel, Craig Hanis, Sharon Kardia, Susan Redline, Richard S Cooper, Hua Tang, and Xiaofeng Zhu. "Genome-Wide Survey in African Americans Demonstrates Potential Epistasis of Fitness in the Human Genome", Genetic Epidemiology, 2016. [pdf] · Jingchao Ni, Mehmet Koyuturk, Hanghang Tong, Jonathan Haines, Rong Xu, and Xiang Zhang. "Disease Gene Prioritization by Integrating Tissue-Specific Molecular Networks Using a Robust Multi-Network Model", BMC Bioinformatics, 17 (1), 453, 2016. [pdf] [code] · Jingchao Ni, Wei Cheng, Wei Fan, and Xiang Zhang. "Self-Grouping Multi-Network Clustering", Proceedings of the IEEE International Conference on Data Mining (ICDM), 2016. [pdf] · Wei Cheng, Xiang Zhang, and Wei Wang. "Robust Methods for Expression Quantitative Trait Loci Mapping", Big Data Analytics in Genomics. Springer (New York), 2016. [pdf] · Wei Cheng, Yu Shi, Xiang Zhang, and Wei Wang. "Sparse Regression Models for Unraveling Group and Individual Associations in eQTL Mapping", BMC Bioinformatics, 17 (1), 136, 2016. [pdf] · Wei Cheng, Zhishan Guo, Xiang Zhang, and Wei Wang. "CGC: A Flexible and Robust Approach to Integrating Co-Regularized Multi-Domain Graph for Clustering", ACM Transactions on Knowledge Discovery from Data (TKDD), 10 (4), 46, 2016. [pdf] · Yubao Wu, Ruoming Jin, and Xiang Zhang. “Efficient and Exact Local Search for Random Walk Based Top-K Proximity Query in Large Graphs”, IEEE Transactions on Knowledge and Data Engineering (TKDE), 28 (5), 1160-1174, 2016. [pdf] · Yubao Wu, Xiaofeng Zhu, Li Li, Wei Fan, Ruoming Jin, and Xiang Zhang. “Mining Dual Networks: Models, Algorithms and Applications”, ACM Transactions on Knowledge Discovery from Data (TKDD), 10 (4), 40, 2016. [pdf] · Rui Liu, Wei Cheng, Hanghang Tong, Wei Wang, and Xiang Zhang. “Robust Multi-Network Clustering via Joint Cross-Domain Cluster Alignment”, Proceedings of the IEEE International Conference on Data Mining (ICDM), 291-300, 2015. [pdf] (Best Paper Candidate) · Jingchao Ni, Hanghang Tong, Wei Fan, and Xiang Zhang. "Flexible and Robust Multi-Network Clustering", Proceedings of the ACM SIGKDD International Conference on Knowledge Discovery and Data Mining (SIGKDD), 835-844, 2015. [pdf][code] · Wei Cheng, Xiang Zhang, Feng Pan, and Wei Wang. "HICC: An Entropy Splitting Based Framework for Hierarchical Co-Clustering", Knowledge and Information Systems (KAIS), 46 (2), 343-367, 2015. [pdf] · Yubao Wu, Ruoming Jin, Jing Li, and Xiang Zhang. "Robust Local Community Detection: On Free Rider Effect and Its Elimination", Proceedings of the VLDB Endowment (PVLDB), 8 (7): 798-809, 2015. [pdf] [code] · Wei Cheng, Yu Shi, Xiang Zhang, and Wei Wang. "Fast and Robust Group-Wise eQTL Mapping Using Sparse Graphical Models", BMC Bioinformatics, 16 (1), 1, 2015. [pdf] · Yubao Wu, Ruoming Jin, Xiaofeng Zhu, and Xiang Zhang. "Finding Dense and Connected Subgraphs in Dual Networks", Proceedings of the IEEE International Conference on Data Engineering (ICDE), 915-926, 2015. [pdf] [code] · Yang Chen, Xiang Zhang, Guoqiang Zhang, and Rong Xu. "Comparative Analysis of a novel Disease Phenotype Network based on Clinical Manifestations", Journal of Biomedical Informatics, 53, 113-120, 2015. [pdf] · Wenhui Wang, Sen Yang, Xiang Zhang, and Jing Li. "Drug Repositioning by Integrating Target Information through a Heterogeneous Network Model", Bioinformatics, 30 (20), 2923-2930, 2014. [pdf] · Yuan Yao, Hanghang Tong, Guo Yan, Feng Xu, Xiang Zhang, Boleslaw Szymanski, and Jian Lu. "Dual-Regularized One-Class Collaborative Filtering", Proceedings of the ACM International Conference on Information and Knowledge Management (CIKM), 759-768, 2014. [pdf] · Jingchao Ni, Hanghang Tong, Wei Fan, and Xiang Zhang. "Inside the Atoms: Ranking on a Network of Networks", Proceedings of the ACM SIGKDD International Conference on Knowledge Discovery and Data Mining (SIGKDD), 1356-1365, 2014. [pdf][code] · Yubao Wu, Ruoming Jin, and Xiang Zhang. "Fast and Unified Local Search for Random Walk Based K-Nearest-Neighbor Query in Large Graphs", Proceedings of the ACM International Conference on Management of Data (SIGMOD), 1139-1150, 2014. [pdf][code] · Wei Cheng, Xiang Zhang, Zhishan Guo, Yu Shi, and Wei Wang. "Graph Regularized Dual Lasso for Robust eQTL Mapping", Bioinformatics, 30 (12), i139-i148, Special Issue of the Proceedings of the International Conference on Intelligent Systems for Molecular Biology (ISMB), 2014. [pdf] · Wei Cheng, Xiaoming Jin, Jiantao Sun, Xuemin Lin, Xiang Zhang, and Wei Wang. “Searching Dimension Incomplete Databases”, IEEE Transactions on Knowledge and Data Engineering (TKDE), 26 (3), 725-738, 2014. [pdf] · Yuhai Zhao, Guoren Wang, Xiang Zhang, Jeffrey Yu, and Zhanghui Wang. “Learning Phenotype Structure Using Sequence Model”, IEEE Transactions on Knowledge and Data Engineering (TKDE), 26 (3), 667-681, 2014. [pdf] · Hongfei Wang and Xiang Zhang. “Binary Time-Series Query Framework for Efficient Quantitative Trait Association Study”, Proceedings of the IEEE International Conference on Data Mining (ICDM), 777-786, 2013. [pdf] · Yubao Wu, Xiaofeng Zhu, Jian Chen, and Xiang Zhang. “EINVis: A Visualization Tool for Exploring Epistatic Interactions Networks in Genetic Association Studies”, Genetic Epidemiology, 37 (7), 675-685, 2013. [pdf] · Wei Cheng, Xiang Zhang, Zhishan Guo, Yubao Wu, Patrick Sullivan and Wei Wang. “Flexible and Robust Co-Regularized Multi-Domain Graph Clustering”, Proceedings of the ACM SIGKDD International Conference on Knowledge Discovery and Data Mining (SIGKDD), 320-328, 2013. [pdf] · Zhaojun Zhang, Shunping Huang, Jack Wang, Xiang Zhang, Fernando Pardo Manuel de Villena, Leonard McMillan, and Wei Wang. “GeneScissors: A Comprehensive Approach to Detecting and Correcting Spurious Transcriptome Inference due to RNAseq Reads Misalignment”, Bioinformatics, 29 (13): i291-299, Special Issue of the Proceedings of the International Conference on Intelligent Systems for Molecular Biology (ISMB), 2013. [pdf] · Xiang Zhang, Shunping Huang, Zhaojun Zhang, and Wei Wang. “Mining Genome-Wide Genetic Markers”, PLoS Computational Biology, 8 (12), e1002828, 2012. [pdf] · Yi Liu, Zhishan Guo, Xiang Zhang, Vladimir Jojic, and Wei Wang. “Metric Learning from Relative Comparisons by Minimizing Squared Residual”, Proceedings of the IEEE International Conference on Data Mining (ICDM), 978-983, 2012. [pdf] · Wei Cheng, Xiang Zhang, Feng Pan, and Wei Wang. “Hierarchical Co-Clustering Based on Entropy Splitting”, Proceedings of the ACM Conference on Information and Knowledge Management (CIKM), 1472-1476, 2012. [pdf] · Wei Cheng, Xiang Zhang, Yubao Wu, Xiaolin Yin, Jing Li, David Heckerman, and Wei Wang. “Inferring Novel Associations between SNP Sets and Gene Sets in eQTL Study Using Sparse Graphical Model”, Proceedings of the ACM Conference on Bioinformatics, Computational Biology and Biomedicine (BCB), 466-472, 2012. [pdf] · Xiang Zhang, Shunping Huang, Wei Sun, and Wei Wang. “Rapid and Robust Resampling-based Multiple Testing Correction with Application in Genome-Wide eQTL Study”, Genetics, 190 (4), 1511-1520, 2012. [pdf] · Mingsheng Long, Jianmin Wang, Guiguang Ding, Wei Cheng, Xiang Zhang, and Wei Wang. “Dual Transfer Learning”, Proceedings of the SIAM International Conference on Data Mining (SDM), 540-551, 2012. [pdf] (Best Paper Candidate) · Xiang Zhang, Wei Cheng, Jennifer Listgarten, Carl Kadie, Shunping Huang, Wei Wang, and David Heckerman. “Learning Transcriptional Regulatory Relationships Using Sparse Graphical Models”, PLoS One, 7 (5): e35762, 2012. [pdf] · Zhaojun Zhang, Xiang Zhang, and Wei Wang. “HTreeQA: Using Semi-Perfect Phylogeny Trees in Quantitative Trait Loci Study on Genotype Data”, G3: Genes, Genomes, Genetics, 2 (2), 175-189, 2012. [pdf] · Wei Cheng, Xiaochuan Ni, Jian-Tao Sun, Xiaoming Jin, Hye-Chung Kum, Xiang Zhang, and Wei Wang. “Measuring Opinion Relevance in Latent Topic Space”, Proceedings of the IEEE International Conference on Social Computing (SocialCom), 323-330, 2011. [pdf] · Xiang Zhang. “Efficient Algorithms for Detecting Genetic Interactions in Genome-Wide Association Study”, Ph.D. Thesis, University of North Carolina at Chapel Hill, 2011. [pdf] (2012 SIGKDD Dissertation Award Honorable Mention) · Xiang Zhang, Shunping Huang, Fei Zou, and Wei Wang. “Tools for Efficient Epistasis Detection in Genome-Wide Association Study”, Source Code for Biology and Medicine, 6 (1), 1-3, 2011. [pdf] · Xiang Zhang, Shunping Huang, Fei Zou, and Wei Wang. “TEAM: Efficient Two-Locus Epistasis Tests in Human Genome-Wide Association Study”, Bioinformatics, 26(12): i217-227, Special Issue of the Proceedings of the International Conference on Intelligent Systems for Molecular Biology (ISMB), 2010. [pdf] [code] · Xiang Zhang, Feng Pan, and Wei Wang. “Finding High-Order Correlations in High-Dimensional Biological Data”, Link Mining: Models, Algorithms and Applications (Eds. Yu, Han, and Faloutsos), Chapter 19, 505-534, Springer, 2010. [pdf] · Xiang Zhang, Feng Pan, Yuying Xie, Fei Zou, and Wei Wang. “COE: A General Approach for Efficient Genome-Wide Two-Locus Epistasis Test in Disease Association Study”, Journal of Computational Biology (JCB), 17 (3), 401-415, 2010. (Invited submission from RECOMB’09) [pdf] · Xiang Zhang, Feng Pan, and Wei Wang. “Efficient Algorithms for Genome-Wide Association Study”, ACM Transactions on Knowledge Discovery from Data (TKDD), 3 (4), 19, 2009. [pdf] · Xiang Zhang, Feng Pan, Yuying Xie, Fei Zou, and Wei Wang. “COE: A General Approach for Efficient Genome-Wide Two-Locus Epistasis Test in Disease Association Study”, Proceedings of the International Conference on Research in Computational Molecular Biology (RECOMB), 253-269, 2009. [pdf] [code] · Xiang Zhang, Fei Zou, and Wei Wang. “FastChi: an Efficient Algorithm for Analyzing Gene-Gene Interactions”, Proceedings of the Pacific Symposium on Biocomputing (PSB), 528-539, 2009. [pdf] · Xiang Zhang, Feng Pan, and Wei Wang. “REDUS: Finding Reducible Subspaces in High Dimensional Data”, Proceedings of the ACM Conference on Information and Knowledge Management (CIKM), 961-970, 2008. [pdf] · Xiang Zhang, Feng Pan, Wei Wang, and Andrew Nobel. “Mining Non-Redundant High Order Correlations in Binary Data”, Proceedings of the VLDB Endowment (PVLDB), (1) 1, 1178-1188, 2008. [pdf] · Xiang Zhang, Fei Zou, and Wei Wang. “FastANOVA: an Efficient Algorithm for Genome-Wide Association Study”, Proceedings of the ACM SIGKDD International Conference on Knowledge Discovery and Data Mining (SIGKDD), 821-829, 2008. [pdf][code] (Best Research Paper Award) · Feng Pan, Xiang Zhang, and Wei Wang. “CRD: Fast Co-clustering on Large Datasets Utilizing Sample-Based Matrix Decomposition”, Proceedings of the ACM International Conference on Management of Data (SIGMOD), 173-184, 2008. [pdf] · Xiang Zhang, Feng Pan, and Wei Wang. “CARE: Finding Local Linear Correlations in High Dimensional Data”, Proceedings of the IEEE International Conference on Data Engineering (ICDE), 130-139, 2008. [pdf] (Best Student Paper Award) · Feng Pan, Xiang Zhang, and Wei Wang. “A General Framework for Fast Co-Clustering on Large Datasets Using Matrix Decomposition”, Proceedings of the IEEE International Conference on Data Engineering (ICDE), 1337-1339, 2008. [pdf] · Xiang Zhang and Wei Wang. “An Efficient Algorithm for Mining Coherent Patterns from Heterogeneous Microarrays”, Proceedings of the International Conference on Scientific and Statistical Database Management (SSDBM), 32, 2007. [pdf] · Xiang Zhang, Wei Wang, and Jun Huan. “On Demand Phenotype Ranking through Subspace Clustering”, Proceedings of the SIAM International Conference on Data Mining (SDM), 623-628, 2007. [pdf] · Xiang Zhang and Wei Wang. “Mining Coherent Patterns from Heterogeneous Microarray Data”, Proceedings of the ACM Conference on Information and Knowledge Management (CIKM), 838-839, 2006. [pdf] · Emre Karakoc, Meral Ozsoyoglu, Cenk Sahinalp, Murat Tasan, and Xiang Zhang. “Novel Approaches to Biomolecular Sequence Indexing”, IEEE Data Engineering Bulletin, 27 (3), 40-47, 2004. [pdf] · Martin Ester and Xiang Zhang. “A Top-Down Method for Mining Most Specific Frequent Patterns in Biological Sequence Data”, Proceedings of the SIAM International Conference on Data Mining (SDM), 90-101, 2004. [pdf]
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